To be honest it sounds like the previous owner has been modifying things and messing about with stuff without really knowing what they are doing....
What colour is the MAF label?
Remove the fuel pump fuse, turn the engine over to get rid of the pressure in the lines (very important), then put the fuel pump fuse back in, undo one of the fuel feed lines, get a container to point the hose into, get someone to turn the engine over and see what comes out. But the FPR issue says you have good fuel pressure.
When you say the aftermarket FPR has been removed, has the standard FPR been put back?
If it was me I would try to get everything back to stock and get the thing running right. The start again with the mods ; )